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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1017
total RNA-seq
510
ChIP-seq
124
single cell RNA-seq
87
RNA microarray
26
WGBS
24
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1157
Transcription
510
DNA binding
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
313
histone modification
312
histone
213
narrow histone mark
170
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
261
August, 2017
193
May, 2020
159
August, 2021
159
October, 2019
120
July, 2018
64
July, 2019
40
May, 2024
39
May, 2021
34
March, 2020
29
October, 2018
27
May, 2022
25
November, 2017
22
February, 2020
21
May, 2019
20
November, 2019
16
April, 2019
12
December, 2017
9
February, 2023
9
November, 2018
9
October, 2017
6
April, 2018
6
September, 2017
4
December, 2018
4
May, 2023
4
November, 2020
3
December, 2019
1
January, 2019
1
March, 2019
Available data
1590
bam
1493
bigWig
1068
tsv
545
bed narrowPeak
336
fastq
bigBed narrowPeak
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1832
Homo sapiens
Biosample type
1834
tissue
337
in vitro differentiated cells
319
primary cell
267
cell line
8
stem cell
Organ
533
connective tissue
474
adipose tissue
361
pancreas
291
liver
186
heart
146
bone element
145
brain
84
kidney
42
musculature of body
33
blood vessel
33
vasculature
limb
25
eye
16
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1834
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1141
GRCh38
1136
hg19
Lab
1699
AMP-T2D consortium
61
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
7
audit script error
Audit category:
23
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bigBed narrowPeak
organ_slims!
limb
BIOSAMPLE
ASSAY
1834 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
285
68
6
4
3
1
4
liver
167
107
1
3
1
1
1
1
bone element
84
kidney
49
9
17
1
1
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