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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
877
ChIP-seq
122
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1160
Transcription
877
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
606
histone modification
605
histone
316
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
199
October, 2019
193
May, 2020
157
August, 2021
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
40
May, 2024
39
May, 2021
34
March, 2020
27
May, 2022
23
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
9
February, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1632
bam
1525
bigWig
1071
tsv
572
bed narrowPeak
356
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2201
Homo sapiens
Biosample type
2209
tissue
562
cell line
374
primary cell
312
in vitro differentiated cells
8
stem cell
Organ
539
connective tissue
480
adipose tissue
414
pancreas
336
liver
247
heart
233
brain
146
bone element
102
kidney
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
artery
25
eye
23
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2209
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1501
GRCh38
1444
hg19
Lab
2074
AMP-T2D consortium
61
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
February, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
2209 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
285
69
6
4
3
1
4
liver
167
145
1
3
1
1
1
1
kidney
49
27
17
1
1
bone element
84
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