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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
194
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
108
control
66
histone modification
65
histone
45
narrow histone mark
20
broad histone mark
20
transcription factor
3
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
60
November, 2017
47
August, 2017
35
August, 2021
20
May, 2022
13
December, 2017
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
Available data
673
bam
596
bigWig
461
fastq
413
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
404
Homo sapiens
Biosample type
291
tissue
101
cell line
11
primary cell
1
in vitro differentiated cells
Organ
634
connective tissue
598
pancreas
477
adipose tissue
404
liver
256
epithelium
252
heart
155
brain
146
bone element
120
kidney
105
vasculature
103
blood vessel
71
artery
47
musculature of body
37
embryo
30
limb
27
eye
16
nerve
11
spleen
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
404
AMP
Genome assembly (visualization)
243
hg19
203
GRCh38
Lab
353
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bigBed broadPeak
bigBed narrowPeak
BIOSAMPLE
ASSAY
404 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
107
167
3
1
1
1
1
1
right lobe of liver
3
3
1
2
cell line
HepG2
79
14
1
2
2
2
1
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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