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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
total RNA-seq
41
ChIP-seq
11
single cell RNA-seq
5
MeRIP-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
DNA accessibility
102
Transcription
41
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
14
control
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
nucleotide modification
Date released
82
August, 2021
43
May, 2021
26
May, 2022
5
November, 2020
3
May, 2023
1
March, 2019
Available data
bigWig
84
bed narrowPeak
63
txt
10
tsv
6
bam
6
fastq
4
bed bed3+
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
160
Homo sapiens
Biosample type
93
tissue
44
in vitro differentiated cells
23
cell line
Organ
63
kidney
37
liver
15
pancreas
3
epithelium
2
connective tissue
Project
227
HPAP
160
AMP
47
KPMP
27
T1D
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
5
hg19
Lab
AMP-T2D consortium
61
Katalin Susztak, Upenn
49
Kyle Gaulton, UCSD
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
5
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
160 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
MeRIP-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
49
11
1
liver
20
islet of Langerhans
7
2
2
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
37
adipocyte
1
osteoblast
1
cell line
HepG2
9
4
2
1
1
EndoC_BH1
3
HEK293T
2
Synthesized DNA
1
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