Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
93
total RNA-seq
11
single cell RNA-seq
10
MeRIP-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
DNA accessibility
128
DNA binding
104
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
88
histone
88
histone modification
51
broad histone mark
37
narrow histone mark
28
transcription factor
17
control
11
RNA binding protein
5
nucleotide modification
Date released
96
August, 2021
78
May, 2021
40
May, 2024
26
May, 2022
10
November, 2020
3
May, 2023
1
March, 2019
Available data
89
bigWig
84
bed narrowPeak
63
txt
10
tsv
6
bam
6
fastq
4
bed bed3+
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
254
Homo sapiens
Biosample type
135
tissue
44
in vitro differentiated cells
40
cell line
35
primary cell
Organ
63
kidney
51
liver
40
heart
20
pancreas
6
epithelium
2
connective tissue
Project
254
AMP
227
HPAP
207
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
54
hg19
40
GRCh38
Lab
AMP-T2D consortium
84
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
Audit category:
7
inconsistent ontology term
assay_slims!
DNA accessibility
lab.title!
AMP-T2D consortium
month_released!
February, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
MeRIP-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
49
11
1
left cardiac atrium
40
liver
20
islet of Langerhans
7
4
2
pancreas
1
in vitro differentiated cells
embryonic stem cell
37
5
adipocyte
1
osteoblast
1
cell line
HepG2
18
9
2
1
1
EndoC_BH1
6
HEK293T
2
Synthesized DNA
1
primary cell
CD8-positive, alpha-beta T cell
33
2
Download