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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
85
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
101
Transcription
85
DNA binding
DNA accessibility
1
3D chromatin structure
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
45
May, 2020
10
February, 2023
March, 2020
1
March, 2023
Available data
181
bam
181
bigWig
96
tsv
85
bed narrowPeak
84
tagAlign
1
hic
Organism
209
Homo sapiens
Biosample type
197
primary cell
6
cell line
6
tissue
Organ
6
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
1
thymus
Project
2419
AMP
208
T1D
95
HPAP
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
182
GRCh38
181
hg19
Lab
207
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
ITG
Audit category:
6
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
fastq
month_released!
March, 2020
BIOSAMPLE
ASSAY
209 results
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total RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 31 more…
cell line
EndoC_BH1
1
3
2
tissue
islet of Langerhans
5
thymus
1
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