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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • 1271total RNA-seq
  • 217single cell RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1765DNA binding
  • 1506Transcription
  • DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 339control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 648February, 2021
  • 406November, 2017
  • 400August, 2017
  • 281October, 2019
  • 212May, 2021
  • 196May, 2020
  • 168July, 2018
  • 141August, 2021
  • 120May, 2019
  • 100July, 2019
  • 94December, 2017
  • 80April, 2019
  • 78November, 2018
  • 76October, 2018
  • 59September, 2018
  • 53March, 2020
  • 49April, 2018
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 35November, 2019
  • 31June, 2019
  • 30January, 2019
  • 27May, 2022
  • 25February, 2020
  • 15October, 2017
  • 14February, 2023
  • 14November, 2020
  • 10December, 2019
  • 6September, 2017
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1May, 2023
  • 1October, 2022
Available data
  • 2817bam
  • 2619bigWig
  • 1472tsv
  • 1223bed narrowPeak
  • 1124fastq
  • 801bigBed narrowPeak
  • 314tagAlign
  • 114bed broadPeak
  • 100txt
  • 79bigBed broadPeak
  • 62bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 8csv
  • 5hdf5
  • 3tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3486Homo sapiens
Biosample type
  • 2177tissue
  • 586cell line
  • 376primary cell
  • 349in vitro differentiated cells
  • 8stem cell
Organ
  • 731liver
  • 654pancreas
  • 647connective tissue
  • 483adipose tissue
  • 316heart
  • 294epithelium
  • 249brain
  • 178vasculature
  • 174blood vessel
  • 146bone element
  • 92artery
  • 81kidney
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3496AMP
Genome assembly (visualization)
  • 2552hg19
  • 2499GRCh38
  • 5hg18
Lab
  • 3342AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 297inconsistent ontology term
  • 28inconsistent control
  • 10audit script error
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

3496 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
GRO-seq
snDrop-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
adipose tissue238213
islet of Langerhans6928464114
liver145167113111
bone element84
heart left ventricle353181411
cell line
HepG23605211
GM1287860
smooth muscle cell of the coronary artery652
EndoC_BH113311621
Panc1131
primary cell
CD8-positive, alpha-beta T cell332
pancreatic alpha cell131012
pancreatic beta cell131012
pancreatic ductal cell13410
pancreatic acinar cell8412
in vitro differentiated cells
adipocyte675
cardiomyocytes359
embryonic stem cell4071
neural progenitor cell217
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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