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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 292total RNA-seq
  • 71ChIP-seq
  • 6single cell RNA-seq
  • 4MeRIP-seq
  • 4pCHi-C
  • 3Hi-C
  • 1RRBS
Assay category
  • 298Transcription
  • DNA accessibility
  • 71DNA binding
  • 33D chromatin structure
  • 1DNA methylation
Target of assay
  • 51histone
  • 51histone modification
  • 37narrow histone mark
  • 15control
  • 14broad histone mark
  • 7transcription factor
  • 2RNA binding protein
  • 2nucleotide modification
Date released
  • 131August, 2017
  • 120July, 2018
  • 39October, 2019
  • 36May, 2021
  • 20November, 2019
  • 6April, 2018
  • 6May, 2022
  • 6September, 2017
  • 5February, 2023
  • 4March, 2020
  • 4November, 2020
  • 2August, 2021
  • 1July, 2019
  • 1March, 2019
Available data
  • 302bam
  • 295bigWig
  • 267tsv
  • 131fastq
  • 21bed bed3+
  • 20bed narrowPeak
  • 9tagAlign
  • 6bed broadPeak
  • 6txt
  • 2bedpe bed3+
  • 2hic
  • 1bed bedMethyl
  • 1bedpe
  • 1bigBed bedMethyl
Organism
  • 381Homo sapiens
Biosample type
  • 381tissue
Organ
  • 342pancreas
  • 20eye
  • 4gonad
  • 4ovary
  • 1connective tissue
  • 1limb
  • 1lymph node
Project
  • 372AMP
  • 9T1D
Genome assembly (visualization)
  • 300hg19
  • 291GRCh38
Lab
  • 363AMP-T2D consortium
  • 11Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
Audit category:
  • 10missing controlled_by
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

381 results

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total RNA-seq
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MeRIP-seq
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RRBS
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