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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
27
ChIP-seq
17
single cell RNA-seq
1
Hi-C
1
RRBS
Assay category
DNA accessibility
66
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
58
August, 2021
September, 2023
23
April, 2019
5
February, 2021
4
October, 2019
3
May, 2023
1
December, 2019
1
July, 2019
Available data
62
txt
27
bam
20
bed narrowPeak
20
bigWig
18
bigBed narrowPeak
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
95
Homo sapiens
Biosample type
95
tissue
Organ
95
kidney
Project
95
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
61
Katalin Susztak, Upenn
34
AMP-T2D consortium
Audit category:
5
audit script error
assay_slims!
DNA accessibility
month_released!
September, 2023
BIOSAMPLE
ASSAY
95 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
RRBS
tissue
kidney
49
27
17
1
1
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