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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1063
ChIP-seq
1033
total RNA-seq
182
single cell RNA-seq
87
RNA microarray
27
WGBS
16
small RNA-seq
11
Hi-C
11
RRBS
5
GRO-seq
5
pCHi-C
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
1233
Transcription
1063
DNA binding
DNA accessibility
38
DNA methylation
11
3D chromatin structure
Target of assay
719
histone modification
718
histone
367
narrow histone mark
350
broad histone mark
219
control
127
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
559
February, 2021
346
August, 2017
226
October, 2019
193
May, 2020
189
August, 2021
May, 2021
120
July, 2018
115
May, 2019
94
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
27
May, 2022
25
February, 2020
20
November, 2019
18
February, 2023
16
November, 2018
15
October, 2017
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
4
May, 2023
4
November, 2020
2
March, 2023
1
August, 2018
1
March, 2019
Available data
1804
bam
1664
bigWig
1058
tsv
700
bed narrowPeak
480
fastq
391
bigBed narrowPeak
272
tagAlign
156
txt
52
bed bed3+
35
bed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
6
bedpe bed3+
6
csv
6
hic
1
bedpe
1
tagAlign bed3+
Organism
2441
Homo sapiens
Biosample type
2229
tissue
cell line
primary cell
216
in vitro differentiated cells
6
stem cell
Organ
616
connective tissue
480
adipose tissue
379
pancreas
348
liver
238
heart
231
brain
149
kidney
146
bone element
87
blood vessel
87
vasculature
78
limb
43
musculature of body
40
nerve
32
artery
27
embryo
25
eye
22
epithelium
22
spleen
9
lung
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
Project
2388
AMP
47
KPMP
9
LungMap
5
T1D
2
community
Genome assembly (visualization)
1641
GRCh38
1580
hg19
5
hg18
Lab
2252
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
11
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
Audit category:
117
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
32
missing controlled_by
Audit category:
25
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
cell line
primary cell
month_released!
March, 2020
May, 2021
BIOSAMPLE
ASSAY
2451 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
WGBS
small RNA-seq
Hi-C
RRBS
GRO-seq
pCHi-C
MeRIP-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
tissue
adipose tissue
2
382
3
islet of Langerhans
69
254
6
3
1
4
4
liver
145
166
1
3
1
1
kidney
27
49
64
1
1
bone element
84
+ See 139 more…
in vitro differentiated cells
adipocyte
67
5
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
+ See 13 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
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