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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
56
total RNA-seq
39
ChIP-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
small RNA-seq
Assay category
121
Transcription
DNA accessibility
39
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
8
control
2
RNA binding protein
2
transcription factor
Date released
58
August, 2021
47
September, 2023
23
April, 2019
13
October, 2019
10
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
June, 2019
3
May, 2023
Available data
62
txt
47
bam
38
bigWig
30
bed narrowPeak
22
bigBed narrowPeak
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
170
Homo sapiens
Biosample type
149
tissue
21
primary cell
cell line
Organ
701
pancreas
638
connective tissue
483
adipose tissue
362
liver
336
epithelium
253
heart
249
brain
170
kidney
147
bone element
120
vasculature
116
blood vessel
78
limb
51
musculature of body
40
nerve
34
artery
29
embryo
26
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
47
KPMP
Genome assembly (visualization)
43
hg19
38
GRCh38
Lab
62
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
4
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
cell line
month_released!
June, 2019
BIOSAMPLE
ASSAY
170 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
snDrop-seq
RNA microarray
Hi-C
small RNA-seq
tissue
kidney
64
49
27
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
epithelial cell of proximal tubule
1
7
1
kidney epithelial cell
1
5
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
kidney glomerular epithelial cell
1
+ See 1 more…
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