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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
MeRIP-seq
3
single cell RNA-seq
Assay category
69
Transcription
27
DNA methylation
DNA accessibility
8
3D chromatin structure
Target of assay
5
control
2
nucleotide modification
Date released
579
February, 2021
392
August, 2017
355
May, 2021
253
October, 2019
240
May, 2020
193
August, 2021
168
July, 2018
115
May, 2019
101
May, 2022
100
July, 2019
94
February, 2023
90
December, 2017
88
November, 2017
76
April, 2019
65
October, 2018
59
September, 2018
56
September, 2020
51
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
27
June, 2019
25
February, 2020
20
November, 2019
17
November, 2018
15
October, 2017
10
December, 2019
9
April, 2020
8
November, 2020
7
December, 2018
7
January, 2019
6
September, 2017
5
January, 2018
4
August, 2018
4
May, 2023
3
June, 2018
3
March, 2023
3
October, 2022
1
March, 2019
Available data
81
bigWig
78
bam
69
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
108
Homo sapiens
Biosample type
73
tissue
35
primary cell
cell line
Organ
22
connective tissue
21
heart
16
brain
13
epithelium
12
adipose tissue
10
kidney
10
liver
10
musculature of body
10
pancreas
10
vasculature
9
blood vessel
5
limb
2
artery
2
pericardium
1
eye
Project
108
AMP
Genome assembly (visualization)
88
hg19
77
GRCh38
Lab
104
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
cell line
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
MeRIP-seq
single cell RNA-seq
tissue
heart left ventricle
2
1
4
islet of Langerhans
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 24 more…
primary cell
osteoblast
4
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 21 more…
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