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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 1387ChIP-seq
  • 369single cell RNA-seq
  • 87RNA microarray
  • 74WGBS
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 1803Transcription
  • 1387DNA binding
  • DNA accessibility
  • 96DNA methylation
  • 303D chromatin structure
Target of assay
  • 979histone modification
  • 978histone
  • 495narrow histone mark
  • 482broad histone mark
  • 260control
  • 153transcription factor
  • 49RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
Date released
  • 579February, 2021
  • 400August, 2017
  • 360May, 2021
  • 253October, 2019
  • 240May, 2020
  • 193August, 2021
  • 168July, 2018
  • 120May, 2019
  • 101May, 2022
  • 100July, 2019
  • 94December, 2017
  • 94February, 2023
  • 91November, 2017
  • 80April, 2019
  • 76October, 2018
  • 59September, 2018
  • 56September, 2020
  • 51March, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 31June, 2019
  • 25February, 2020
  • 20November, 2019
  • 17November, 2018
  • 15October, 2017
  • 10December, 2019
  • 9April, 2020
  • 8November, 2020
  • 7December, 2018
  • 7January, 2019
  • 6September, 2017
  • 5January, 2018
  • 4August, 2018
  • 4May, 2023
  • 3June, 2018
  • 3March, 2023
  • 3October, 2022
  • 1March, 2019
Available data
  • 2433bam
  • 2302bigWig
  • 1468tsv
  • 933bed narrowPeak
  • 829fastq
  • 448bigBed narrowPeak
  • 378tagAlign
  • 156txt
  • 93zippedFastqFolder
  • 62bed bed3+
  • 56bed broadPeak
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21bigBed broadPeak
  • 21hic
  • 8csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 3458Homo sapiens
Biosample type
  • 2307tissue
  • 800primary cell
  • cell line
  • 351in vitro differentiated cells
  • 10stem cell
Organ
  • 701pancreas
  • 650connective tissue
  • 483adipose tissue
  • 362liver
  • 342epithelium
  • 258heart
  • 249brain
  • 173kidney
  • 147bone element
  • 120vasculature
  • 116blood vessel
  • 78limb
  • 61musculature of body
  • 40nerve
  • 34artery
  • 29embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2976AMP
  • 227HPAP
  • 206T1D
  • 47KPMP
  • 9LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 2245hg19
  • 2234GRCh38
  • 5hg18
Lab
  • 2766AMP-T2D consortium
  • 286Kyle Gaulton, UCSD
  • 227Klaus Kaestner, Upenn
  • 61Katalin Susztak, Upenn
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 2Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 234inconsistent ontology term
  • 27inconsistent control
  • 13audit script error
Audit category:
  • 76missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
assay_slims!
  • DNA accessibility
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

3468 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
adipose tissue382231
islet of Langerhans2927164314
liver167145131111
kidney49276411
bone element84
primary cell
monocyte548511
pancreatic alpha cell521312311
Langerhans cell85
pancreatic beta cell211312161
exocrine cell39
in vitro differentiated cells
adipocyte5671
cardiomyocytes593
embryonic stem cell7401
neural progenitor cell721
pancreatic endoderm4181
stem cell
hESC31
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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