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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
pCHi-C
12
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
DNA accessibility
12
Transcription
Date released
18
May, 2021
10
February, 2023
6
May, 2022
Available data
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
34
Homo sapiens
Biosample type
in vitro differentiated cells
16
primary cell
13
tissue
5
cell line
Organ
12
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
27
T1D
7
AMP
Lab
710
AMP-T2D consortium
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
month_released!
October, 2018
BIOSAMPLE
ASSAY
34 results
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pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 10 more…
tissue
islet of Langerhans
11
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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