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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
Assay category
DNA accessibility
34
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
26
August, 2017
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
October, 2019
Available data
2730
bam
2573
bigWig
1454
tsv
1215
bed narrowPeak
1116
fastq
787
bigBed narrowPeak
358
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
43
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
43
Homo sapiens
Biosample type
28
tissue
in vitro differentiated cells
10
primary cell
3
stem cell
2
cell line
Organ
22
pancreas
8
liver
6
connective tissue
5
epithelium
4
adipose tissue
3
brain
2
blood vessel
2
vasculature
Project
43
AMP
Genome assembly (visualization)
43
hg19
35
GRCh38
Lab
41
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
month_released!
January, 2021
organ_slims!
large intestine
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
Hi-C
pCHi-C
total RNA-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 2 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
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