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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
73
ChIP-seq
6
WGBS
1
RNA microarray
1
pCHi-C
Assay category
389
Transcription
73
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
July, 2019
2
February, 2020
1
August, 2021
1
March, 2020
1
May, 2023
Available data
425
bam
407
bigWig
389
tsv
40
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
469
Homo sapiens
Biosample type
470
tissue
in vitro differentiated cells
Organ
764
pancreas
737
liver
553
connective tissue
470
adipose tissue
364
epithelium
294
heart
233
brain
181
kidney
168
vasculature
165
blood vessel
147
bone element
90
artery
73
limb
60
blood
60
bodily fluid
51
musculature of body
40
nerve
28
eye
23
spleen
19
vein
10
lung
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
470
AMP
Genome assembly (visualization)
407
GRCh38
406
hg19
Lab
470
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
month_released!
July, 2019
BIOSAMPLE
ASSAY
470 results
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total RNA-seq
ChIP-seq
WGBS
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
omental fat pad
1
11
white adipose tissue
12
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