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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
548
ChIP-seq
184
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
548
DNA binding
188
Transcription
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
49
November, 2018
31
August, 2021
20
May, 2022
8
July, 2019
6
October, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
664
bam
587
bigWig
461
fastq
410
bed narrowPeak
352
bigBed narrowPeak
169
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
4
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
bigBed bedMethyl
2
hic
1
csv
1
vcf
Organism
749
Homo sapiens
Biosample type
399
cell line
335
tissue
15
in vitro differentiated cells
primary cell
Organ
749
liver
616
connective tissue
484
pancreas
478
adipose tissue
299
heart
232
brain
166
kidney
147
blood vessel
147
vasculature
146
bone element
90
artery
85
epithelium
77
limb
60
blood
60
bodily fluid
45
musculature of body
40
nerve
37
embryo
25
eye
21
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
749
AMP
Genome assembly (visualization)
586
hg19
514
GRCh38
Lab
698
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
biosample_type!
primary cell
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
749 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
2
2
2
1
tissue
liver
145
167
3
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
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