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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
5
total RNA-seq
1
small RNA-seq
Assay category
DNA accessibility
37
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
23
April, 2019
18
October, 2019
2
July, 2019
Available data
62
txt
43
bam
33
bigWig
27
bed narrowPeak
18
bigBed narrowPeak
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
43
Homo sapiens
Biosample type
29
tissue
primary cell
14
cell line
Organ
664
liver
551
connective tissue
442
pancreas
435
adipose tissue
196
brain
160
heart
137
blood vessel
137
vasculature
86
artery
73
epithelium
70
limb
60
blood
60
bodily fluid
bone element
43
kidney
39
nerve
36
embryo
22
spleen
12
musculature of body
1
pituitary gland
Project
43
AMP
Genome assembly (visualization)
33
GRCh38
33
hg19
Lab
43
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
primary cell
organ_slims!
bone element
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
total RNA-seq
small RNA-seq
tissue
kidney
27
metanephros
1
1
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
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