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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
Assay category
DNA accessibility
96
DNA binding
Target of assay
49
histone
49
histone modification
47
transcription factor
28
broad histone mark
21
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
67
November, 2017
26
August, 2017
3
October, 2017
Available data
2508
bam
2314
bigWig
1328
tsv
1099
bed narrowPeak
907
fastq
744
bigBed narrowPeak
298
tagAlign
157
txt
93
bed broadPeak
58
bigBed broadPeak
54
bed bed3+
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
90
Homo sapiens
Biosample type
61
cell line
35
tissue
primary cell
Organ
61
liver
13
musculature of body
12
pancreas
9
brain
1
adipose tissue
1
connective tissue
Project
96
AMP
Genome assembly (visualization)
96
hg19
58
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
cell line
HepG2
61
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
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