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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
73
ChIP-seq
6
WGBS
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
399
Transcription
73
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
435
bam
417
bigWig
399
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
480
Homo sapiens
Biosample type
480
tissue
primary cell
1
in vitro differentiated cells
Organ
liver
619
connective tissue
498
pancreas
481
adipose tissue
306
heart
233
brain
167
kidney
148
blood vessel
vasculature
146
bone element
90
artery
86
epithelium
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
37
embryo
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
481
AMP
Genome assembly (visualization)
417
GRCh38
416
hg19
Lab
481
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
biosample_type!
primary cell
organ_slims!
liver
vasculature
BIOSAMPLE
ASSAY
481 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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