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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
24
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
40
DNA binding
24
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
324
November, 2017
321
May, 2021
122
February, 2021
82
February, 2023
74
May, 2022
73
August, 2021
62
November, 2018
59
September, 2018
58
October, 2019
56
September, 2020
54
August, 2017
48
May, 2020
46
July, 2018
41
April, 2018
39
February, 2018
31
December, 2017
28
December, 2018
23
January, 2019
21
March, 2020
20
July, 2019
19
June, 2019
15
November, 2019
7
December, 2019
6
November, 2020
5
January, 2018
5
March, 2023
5
May, 2019
4
October, 2022
3
August, 2018
3
June, 2018
2
October, 2018
Available data
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
24
tsv
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
73
Homo sapiens
Biosample type
tissue
44
cell line
28
in vitro differentiated cells
1
primary cell
Organ
32
liver
8
embryo
3
epithelium
2
kidney
2
pancreas
Project
73
AMP
Genome assembly (visualization)
42
hg19
28
GRCh38
Lab
39
AMP-T2D consortium
34
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
tissue
files.file_type!
bed bed3+
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
primary cell
hepatocyte
1
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