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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
36
ChIP-seq
4
Hi-C
1
small RNA-seq
Assay category
56
Transcription
36
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
24
histone
24
histone modification
13
broad histone mark
11
narrow histone mark
7
control
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
18
October, 2019
10
June, 2019
6
July, 2019
3
November, 2017
1
March, 2020
Available data
92
bam
85
bigWig
56
tsv
24
bed narrowPeak
20
bigBed narrowPeak
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
bigBed bedMethyl
Organism
96
Homo sapiens
Biosample type
tissue
58
cell line
38
primary cell
Organ
424
liver
392
epithelium
350
pancreas
110
connective tissue
87
vasculature
84
blood vessel
68
heart
60
artery
60
blood
60
bodily fluid
39
kidney
37
embryo
19
vein
15
brain
12
musculature of body
3
adipose tissue
3
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
96
AMP
Genome assembly (visualization)
87
hg19
80
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
DNA accessibility
biosample_type!
tissue
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
Hi-C
small RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
primary cell
endothelial cell of umbilical vein
17
2
skeletal muscle satellite cell
1
8
1
brain microvascular endothelial cell
3
1
skeletal muscle cell
2
endothelial cell of coronary artery
1
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