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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
ChIP-seq
Assay category
409
DNA binding
DNA accessibility
Target of assay
337
transcription factor
81
recombinant protein
70
RNA binding protein
67
histone
67
histone modification
35
narrow histone mark
32
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
27
December, 2018
16
October, 2019
15
January, 2019
14
August, 2017
14
December, 2017
12
June, 2019
Available data
1220
bam
1165
bigWig
863
fastq
660
bed narrowPeak
478
tsv
409
bigBed narrowPeak
146
tagAlign
93
zippedFastqFolder
79
bed broadPeak
79
bigBed broadPeak
25
bed bed3+
12
bedpe bed3+
12
hic
7
bed bedMethyl
7
bigBed bedMethyl
4
hdf5
3
cool
3
tar
2
csv
2
ibed
1
txt
1
vcf
Organism
409
Homo sapiens
Biosample type
353
cell line
tissue
42
primary cell
14
in vitro differentiated cells
Organ
307
liver
54
blood
54
bodily fluid
36
epithelium
14
vasculature
12
blood vessel
10
vein
connective tissue
8
musculature of body
6
brain
kidney
6
pancreas
3
heart
2
eye
Project
409
AMP
Genome assembly (visualization)
405
hg19
376
GRCh38
Lab
409
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
tissue
organ_slims!
connective tissue
kidney
BIOSAMPLE
ASSAY
409 results
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ChIP-seq
cell line
HepG2
293
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
skeletal muscle satellite cell
7
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
+ See 4 more…
in vitro differentiated cells
hepatocyte
14
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