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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
6
WGBS
5
GRO-seq
1
ChIP-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
128
Transcription
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
DNA binding
Target of assay
1
transcription factor
Date released
76
February, 2023
38
September, 2020
18
February, 2021
5
January, 2018
1
August, 2017
1
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
September, 2018
Available data
bam
1271
bigWig
920
fastq
730
bed narrowPeak
511
tsv
424
bigBed narrowPeak
160
tagAlign
93
zippedFastqFolder
79
bed broadPeak
79
bigBed broadPeak
36
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
5
hdf5
3
cool
3
tar
2
csv
2
ibed
1
txt
1
vcf
Organism
143
Homo sapiens
Biosample type
135
primary cell
tissue
5
in vitro differentiated cells
2
cell line
1
stem cell
Organ
59
epithelium
59
pancreas
2
liver
1
adipose tissue
1
connective tissue
1
embryo
Project
132
HPAP
11
AMP
Genome assembly (visualization)
5
hg18
1
hg19
Lab
132
Klaus Kaestner, Upenn
11
AMP-T2D consortium
assay_slims!
DNA accessibility
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
143 results
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total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
primary cell
pancreatic alpha cell
42
6
exocrine cell
39
Langerhans cell
34
pancreatic beta cell
11
pancreatic cell
2
+ See 1 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
white fat cell
1
cell line
HepG2
1
1
stem cell
hESC
1
See all biosamples
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