Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
Assay category
10
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
2
October, 2019
1
August, 2021
1
March, 2023
1
November, 2019
Available data
1197
bam
1136
bigWig
852
fastq
656
bed narrowPeak
457
tsv
354
bigBed narrowPeak
154
tagAlign
93
zippedFastqFolder
73
bed broadPeak
73
bigBed broadPeak
34
bed bed3+
12
bedpe bed3+
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
3
cool
3
hdf5
3
tar
2
ibed
1
csv
1
txt
1
vcf
Organism
10
Homo sapiens
Biosample type
tissue
4
in vitro differentiated cells
4
primary cell
2
cell line
Organ
6
epithelium
4
pancreas
2
blood vessel
vasculature
2
vein
1
liver
Project
6
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
biosample_type!
tissue
month_released!
November, 2018
organ_slims!
vasculature
BIOSAMPLE
ASSAY
10 results
search-icon
table-tab-icon
Clear Filters
Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
Download