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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
total RNA-seq
26
ChIP-seq
12
single cell RNA-seq
6
WGBS
2
pCHi-C
Assay category
76
Transcription
DNA accessibility
26
DNA binding
6
DNA methylation
Target of assay
16
histone
16
histone modification
9
control
8
broad histone mark
8
narrow histone mark
1
transcription factor
Date released
324
May, 2021
324
November, 2017
121
August, 2017
86
February, 2023
78
August, 2021
74
May, 2022
71
February, 2021
62
November, 2018
59
October, 2019
59
September, 2018
56
September, 2020
48
July, 2018
48
May, 2020
46
December, 2017
43
April, 2018
39
February, 2018
28
December, 2018
26
July, 2019
26
June, 2019
23
January, 2019
22
March, 2020
15
November, 2019
10
November, 2020
7
December, 2019
5
January, 2018
5
March, 2023
5
May, 2019
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
91
bam
81
bigWig
70
tsv
57
fastq
17
bed narrowPeak
2
bed bed3+
2
tagAlign
Organism
110
Homo sapiens
Biosample type
tissue
61
in vitro differentiated cells
29
cell line
20
primary cell
Organ
58
artery
58
blood vessel
heart
58
vasculature
32
epithelium
32
pancreas
13
embryo
6
connective tissue
1
liver
Project
92
AMP
18
HPAP
Genome assembly (visualization)
83
hg19
81
GRCh38
Lab
92
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_slims!
DNA accessibility
biosample_type!
tissue
organ_slims!
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BIOSAMPLE
ASSAY
110 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
+ See 4 more…
cell line
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
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