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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
ChIP-seq
Assay category
987
DNA binding
DNA accessibility
Target of assay
555
histone modification
554
histone
427
transcription factor
284
narrow histone mark
270
broad histone mark
89
RNA binding protein
88
recombinant protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
307
November, 2017
158
October, 2019
93
May, 2019
65
April, 2019
63
November, 2018
62
August, 2017
45
October, 2018
40
May, 2024
36
December, 2017
30
December, 2018
27
May, 2020
21
January, 2019
14
August, 2021
11
November, 2019
6
October, 2017
5
February, 2021
3
March, 2020
1
May, 2021
Available data
2232
bam
2065
bigWig
1193
tsv
987
bed narrowPeak
763
fastq
730
bigBed narrowPeak
258
tagAlign
157
txt
93
bed broadPeak
58
bigBed broadPeak
30
bed bed3+
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
981
Homo sapiens
Biosample type
595
tissue
392
cell line
226
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
396
liver
164
brain
111
heart
92
pancreas
61
blood vessel
61
vasculature
54
blood
54
bodily fluid
48
limb
27
kidney
25
artery
24
nerve
19
musculature of body
13
epithelium
12
spleen
7
adipose tissue
7
connective tissue
1
pituitary gland
Project
983
AMP
4
T1D
Genome assembly (visualization)
910
GRCh38
891
hg19
Lab
933
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
14
Bing Ren, UCSD
Audit category:
28
inconsistent control
22
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
987 results
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Clear Filters
ChIP-seq
tissue
liver
82
left cardiac atrium
40
heart left ventricle
29
body of pancreas
26
tibial nerve
24
+ See 100 more…
cell line
HepG2
307
GM12878
54
EndoC_BH1
13
Panc1
6
smooth muscle cell of the coronary artery
4
+ See 4 more…
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