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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
pCHi-C
13
total RNA-seq
7
Hi-C
3
ChIP-seq
Assay category
13
Transcription
7
3D chromatin structure
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
624
February, 2021
397
November, 2017
279
August, 2017
250
October, 2019
203
August, 2021
194
May, 2020
120
July, 2018
115
May, 2019
80
April, 2019
77
November, 2018
74
October, 2018
69
July, 2019
48
December, 2017
47
March, 2020
47
September, 2023
45
May, 2021
40
May, 2024
35
December, 2018
35
November, 2019
30
January, 2019
27
May, 2022
25
February, 2020
20
February, 2023
15
October, 2017
10
November, 2020
9
April, 2020
6
April, 2018
6
September, 2017
4
May, 2023
3
December, 2019
2
March, 2023
1
March, 2019
1
October, 2022
Available data
35
tsv
14
bam
14
bigWig
7
bedpe bed3+
7
hic
3
bed narrowPeak
Organism
47
Homo sapiens
Biosample type
38
tissue
9
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
10
pancreas
7
heart
5
musculature of body
3
blood vessel
3
epithelium
3
liver
3
vasculature
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
40
AMP
7
T1D
Genome assembly (visualization)
21
hg19
14
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_slims!
DNA accessibility
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
47 results
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pCHi-C
total RNA-seq
Hi-C
ChIP-seq
tissue
psoas muscle
1
2
2
islet of Langerhans
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
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