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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
27
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
33
Transcription
27
DNA binding
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
transcription factor
Date released
26
February, 2021
14
November, 2019
14
October, 2019
6
November, 2020
5
May, 2021
3
March, 2020
2
August, 2021
1
February, 2023
Available data
60
bam
52
bigWig
33
tsv
18
bed narrowPeak
6
bigBed narrowPeak
1
bed bed3+
1
bedpe bed3+
1
hdf5
1
hic
Organism
70
Homo sapiens
Biosample type
400
tissue
275
primary cell
71
cell line
2
in vitro differentiated cells
Organ
102
liver
71
pancreas
58
epithelium
54
artery
54
blood vessel
54
heart
54
vasculature
11
kidney
9
blood
9
bodily fluid
8
embryo
1
mammary gland
Project
67
AMP
4
T1D
Genome assembly (visualization)
53
hg19
52
GRCh38
Lab
65
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
56
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
bed bedMethyl
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
33
14
6
2
1
1
Panc1
13
1
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