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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
6
MeRIP-seq
2
Capture-C
2
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
34
Transcription
DNA accessibility
2
DNA binding
1
3D chromatin structure
Target of assay
5
control
3
nucleotide modification
Date released
26
February, 2021
6
November, 2020
4
May, 2021
4
November, 2019
2
August, 2021
2
March, 2020
1
February, 2023
1
October, 2019
Available data
49
bam
47
bigWig
34
tsv
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
45
Homo sapiens
Biosample type
535
tissue
271
primary cell
46
cell line
43
in vitro differentiated cells
1
stem cell
Organ
93
liver
54
artery
54
blood vessel
54
heart
54
vasculature
53
pancreas
46
epithelium
11
kidney
8
embryo
6
blood
6
bodily fluid
1
mammary gland
0
connective tissue
Project
44
AMP
2
T1D
Genome assembly (visualization)
35
hg19
34
GRCh38
Lab
40
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
44
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
46 results
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total RNA-seq
MeRIP-seq
Capture-C
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
33
6
2
2
1
1
glomerular visceral epithelial cell
1
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