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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
18
total RNA-seq
1
Hi-C
1
WGBS
Assay category
393
DNA binding
18
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
350
transcription factor
88
recombinant protein
62
RNA binding protein
30
chromatin remodeller
25
histone
25
histone modification
13
control
13
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
268
November, 2017
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
17
October, 2019
2
March, 2020
Available data
461
bam
427
fastq
413
bigWig
374
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
32
tsv
12
tagAlign
3
tar
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
413
Homo sapiens
Biosample type
1104
tissue
413
cell line
322
primary cell
204
in vitro differentiated cells
3
stem cell
Organ
332
liver
54
blood
54
bodily fluid
27
pancreas
epithelium
11
kidney
8
embryo
Project
413
AMP
Genome assembly (visualization)
408
hg19
348
GRCh38
Lab
399
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
February, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
413 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
GM12878
54
H1-hESC
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
1
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