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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
ChIP-seq
95
total RNA-seq
1
Hi-C
1
WGBS
Assay category
389
DNA binding
95
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
335
transcription factor
81
recombinant protein
57
RNA binding protein
36
histone
36
histone modification
24
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
January, 2019
12
November, 2019
7
October, 2019
5
March, 2020
5
May, 2021
Available data
533
bam
486
bigWig
404
fastq
370
bed narrowPeak
338
bigBed narrowPeak
107
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
486
Homo sapiens
Biosample type
1520
tissue
487
primary cell
486
cell line
246
in vitro differentiated cells
3
stem cell
Organ
327
liver
56
artery
56
blood vessel
56
heart
56
vasculature
53
pancreas
47
epithelium
39
blood
39
bodily fluid
kidney
8
embryo
Project
482
AMP
4
T1D
Genome assembly (visualization)
481
hg19
421
GRCh38
Lab
472
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
46
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
January, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
486 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
326
1
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
13
33
GM12878
39
H1-hESC
8
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