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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ChIP-seq
Assay category
331
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
226
November, 2017
50
November, 2018
23
December, 2018
11
August, 2021
8
January, 2019
7
October, 2019
5
February, 2021
1
November, 2019
Available data
326
bigWig
322
bed narrowPeak
319
bam
307
fastq
298
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
5
tagAlign
3
tar
Organism
331
Homo sapiens
Biosample type
331
cell line
92
tissue
46
in vitro differentiated cells
9
primary cell
Organ
277
liver
41
blood
41
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
331
AMP
Genome assembly (visualization)
322
hg19
281
GRCh38
Lab
320
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
December, 2019
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
331 results
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ChIP-seq
cell line
HepG2
277
GM12878
41
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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