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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
total RNA-seq
6
MeRIP-seq
2
Capture-C
2
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
32
Transcription
DNA accessibility
2
DNA binding
Target of assay
3
control
3
nucleotide modification
2
histone
2
histone modification
2
narrow histone mark
Date released
26
February, 2021
November, 2019
6
November, 2020
5
May, 2021
3
March, 2020
2
August, 2021
1
February, 2023
October, 2019
Available data
34
bam
34
bigWig
32
tsv
2
bed narrowPeak
Organism
42
Homo sapiens
Biosample type
288
primary cell
43
cell line
24
in vitro differentiated cells
3
tissue
Organ
400
liver
60
blood
60
bodily fluid
58
artery
58
blood vessel
58
heart
58
vasculature
43
epithelium
43
pancreas
8
embryo
4
kidney
1
mammary gland
Project
39
AMP
4
T1D
Genome assembly (visualization)
34
GRCh38
34
hg19
Lab
37
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
42
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
November, 2019
October, 2019
BIOSAMPLE
ASSAY
43 results
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total RNA-seq
MeRIP-seq
Capture-C
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
32
6
2
2
1
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