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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ChIP-seq
1
Hi-C
Assay category
342
DNA binding
1
3D chromatin structure
Target of assay
266
transcription factor
66
recombinant protein
56
control
36
RNA binding protein
17
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
87
February, 2021
61
November, 2018
44
August, 2021
28
December, 2018
28
October, 2019
23
January, 2019
15
November, 2019
9
March, 2020
6
February, 2023
6
November, 2020
5
May, 2021
2
March, 2023
1
May, 2020
1
October, 2022
Available data
343
fastq
341
bam
295
bigWig
276
bed narrowPeak
276
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
Organism
343
Homo sapiens
Biosample type
343
cell line
89
tissue
9
primary cell
Organ
316
liver
27
blood
27
bodily fluid
Project
343
AMP
Genome assembly (visualization)
293
hg19
244
GRCh38
Lab
343
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
343 results
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ChIP-seq
Hi-C
cell line
HepG2
315
1
GM12878
27
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