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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
Assay category
88
DNA binding
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
43
May, 2021
25
August, 2017
10
August, 2021
9
December, 2017
8
February, 2018
4
February, 2023
4
January, 2018
4
March, 2020
2
October, 2019
1
August, 2018
Available data
273
bam
246
bigWig
140
fastq
tsv
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
110
Homo sapiens
Biosample type
636
tissue
316
primary cell
121
cell line
110
in vitro differentiated cells
4
stem cell
Organ
32
connective tissue
9
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
110
AMP
Genome assembly (visualization)
18
hg19
10
GRCh38
4
hg18
Lab
66
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
tsv
month_released!
December, 2019
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
38
5
adipocyte
25
1
1
neural progenitor cell
8
pancreatic endoderm
6
1
cardiomyocytes (cardiac muscle cell)
2
1
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