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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
136
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
184
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
39
February, 2018
30
August, 2021
29
December, 2017
22
February, 2021
6
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
273
bam
246
bigWig
140
fastq
131
tsv
110
bed narrowPeak
40
tagAlign
21
bed bed3+
bigBed narrowPeak
7
bedpe bed3+
4
hic
ibed
Organism
335
Homo sapiens
Biosample type
1929
tissue
742
primary cell
335
in vitro differentiated cells
278
cell line
10
stem cell
Organ
79
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
335
AMP
Genome assembly (visualization)
238
hg19
233
GRCh38
4
hg18
Lab
291
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
bigBed narrowPeak
ibed
organ_slims!
pericardium
BIOSAMPLE
ASSAY
335 results
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ChIP-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
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