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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
pCHi-C
Assay category
82
DNA binding
15
Transcription
DNA accessibility
Target of assay
51
histone
51
histone modification
31
transcription factor
26
narrow histone mark
24
broad histone mark
control
4
RNA binding protein
2
chromatin remodeller
Date released
47
August, 2017
31
February, 2018
19
December, 2017
4
January, 2018
1
August, 2018
Available data
226
bigWig
223
bam
129
tsv
102
fastq
92
bed narrowPeak
28
tagAlign
16
bed bed3+
7
bedpe bed3+
4
hic
2
ibed
Organism
102
Homo sapiens
Biosample type
365
cell line
269
tissue
141
primary cell
102
in vitro differentiated cells
3
stem cell
Organ
48
connective tissue
20
embryo
epithelium
14
liver
1
adipose tissue
Project
102
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
4
hg18
Lab
102
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
assay_slims!
DNA accessibility
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
in vitro differentiated cells
adipocyte
47
pancreatic endoderm
13
4
1
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
Posterior foregut
4
1
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