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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
88
ChIP-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
88
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
51
histone
51
histone modification
26
narrow histone mark
25
broad histone mark
21
control
16
transcription factor
5
RNA binding protein
Date released
127
May, 2021
August, 2017
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
177
bam
165
bigWig
131
tsv
44
fastq
34
bed narrowPeak
26
tagAlign
7
bedpe bed3+
4
hic
2
bed bed3+
2
ibed
Organism
241
Homo sapiens
Biosample type
1980
tissue
746
primary cell
571
cell line
241
in vitro differentiated cells
7
stem cell
Organ
16
embryo
12
connective tissue
5
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
241
AMP
Genome assembly (visualization)
168
hg19
161
GRCh38
4
hg18
Lab
197
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
Audit category:
2
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
August, 2017
December, 2017
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
241 results
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total RNA-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
1
neural progenitor cell
7
21
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
9
1
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