Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
114
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
195
DNA binding
116
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
chromatin remodeller
Date released
127
May, 2021
65
August, 2017
42
December, 2017
39
February, 2018
30
August, 2021
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
248
bam
221
bigWig
137
fastq
109
tsv
107
bed narrowPeak
40
tagAlign
21
bed bed3+
13
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
326
Homo sapiens
Biosample type
1768
tissue
779
primary cell
514
cell line
326
in vitro differentiated cells
10
stem cell
Organ
73
connective tissue
29
embryo
23
epithelium
14
liver
3
pancreas
1
adipose tissue
1
heart
Project
326
AMP
Genome assembly (visualization)
229
hg19
222
GRCh38
4
hg18
Lab
282
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
87
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
February, 2021
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
326 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
65
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
+ See 27 more…
See all biosamples
Download