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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
87
single cell RNA-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
Assay category
184
Transcription
DNA accessibility
57
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
76
February, 2023
74
May, 2022
57
May, 2021
56
September, 2020
18
February, 2021
12
July, 2019
3
October, 2022
2
May, 2020
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
October, 2019
1
September, 2018
Available data
495
bigWig
bam
349
fastq
256
tsv
218
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
49
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
304
Homo sapiens
Biosample type
609
tissue
304
primary cell
78
in vitro differentiated cells
61
cell line
7
stem cell
Organ
113
epithelium
103
pancreas
5
vasculature
4
blood vessel
4
brain
3
connective tissue
3
kidney
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
musculature of body
Project
227
HPAP
60
AMP
16
T1D
1
ITG
Genome assembly (visualization)
53
hg19
1
GRCh38
Lab
227
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
25
AMP-T2D consortium
1
ITG
Audit category:
4
audit script error
3
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bam
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
304 results
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total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNAme array
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
pancreatic beta cell
11
16
1
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