Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
92
ChIP-seq
70
single cell RNA-seq
47
WGBS
7
Hi-C
Assay category
163
Transcription
92
DNA binding
DNA accessibility
47
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
47
September, 2018
41
May, 2022
37
February, 2023
33
April, 2018
33
July, 2018
27
October, 2019
26
August, 2017
16
September, 2020
7
July, 2019
6
February, 2021
6
June, 2019
6
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
206
fastq
202
bam
182
bigWig
116
tsv
66
bed narrowPeak
41
zippedFastqFolder
22
bigBed narrowPeak
bed bedMethyl
6
bed broadPeak
6
bigBed bedMethyl
6
bigBed broadPeak
5
bed bed3+
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
Organism
309
Homo sapiens
Biosample type
309
primary cell
59
cell line
24
in vitro differentiated cells
3
tissue
Organ
309
epithelium
275
pancreas
30
connective tissue
29
vasculature
26
blood vessel
21
kidney
19
vein
15
brain
12
musculature of body
10
liver
9
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
206
AMP
103
HPAP
Genome assembly (visualization)
187
hg19
176
GRCh38
Lab
206
AMP-T2D consortium
103
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
309 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
13
12
31
1
pancreatic beta cell
21
13
12
16
1
pancreatic ductal cell
4
13
10
pancreatic acinar cell
4
8
12
1
endothelial cell of umbilical vein
17
2
+ See 16 more…
See all biosamples
Download