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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
147
single cell RNA-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
380
Transcription
DNA accessibility
58
DNA methylation
53
DNA binding
6
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
79
May, 2021
76
February, 2023
74
May, 2022
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
20
February, 2021
11
October, 2019
8
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
Available data
505
bigWig
495
bam
311
fastq
258
tsv
bed narrowPeak
100
tagAlign
74
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
514
Homo sapiens
Biosample type
1702
tissue
514
primary cell
237
cell line
234
in vitro differentiated cells
8
stem cell
Organ
229
epithelium
210
pancreas
22
connective tissue
15
vasculature
13
blood vessel
12
kidney
10
brain
8
liver
8
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
233
AMP
168
HPAP
112
T1D
1
ITG
Genome assembly (visualization)
291
hg19
265
GRCh38
Lab
228
AMP-T2D consortium
168
Klaus Kaestner, Upenn
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
19
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
bedpe bed3+
month_released!
September, 2020
BIOSAMPLE
ASSAY
514 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
37
12
6
31
monocyte
54
1
1
1
pancreatic beta cell
20
12
6
16
Langerhans cell
45
exocrine cell
39
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