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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
total RNA-seq
187
single cell RNA-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
429
Transcription
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
79
May, 2021
76
February, 2023
74
May, 2022
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
29
July, 2019
27
September, 2018
26
August, 2017
20
February, 2021
11
October, 2019
8
June, 2019
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
498
bigWig
488
bam
349
fastq
251
tsv
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
567
Homo sapiens
Biosample type
1698
tissue
567
primary cell
239
in vitro differentiated cells
185
cell line
8
stem cell
Organ
244
epithelium
229
pancreas
22
connective tissue
16
vasculature
14
blood vessel
12
kidney
10
brain
9
vein
7
heart
5
musculature of body
3
liver
2
adipose tissue
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
227
AMP
227
HPAP
112
T1D
1
ITG
Genome assembly (visualization)
288
hg19
258
GRCh38
Lab
227
Klaus Kaestner, Upenn
222
AMP-T2D consortium
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
19
inconsistent ontology term
4
audit script error
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
month_released!
December, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
567 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
6
31
1
Langerhans cell
85
monocyte
54
1
1
1
pancreatic beta cell
21
12
6
16
1
exocrine cell
39
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