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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
59
single cell RNA-seq
47
ChIP-seq
41
WGBS
9
RRBS
8
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
DNA accessibility
133
Transcription
50
DNA methylation
47
DNA binding
8
3D chromatin structure
Target of assay
31
histone
31
histone modification
17
narrow histone mark
14
broad histone mark
14
control
5
RNA binding protein
5
transcription factor
Date released
May, 2021
74
May, 2022
47
May, 2020
31
July, 2019
31
June, 2019
18
September, 2020
9
October, 2019
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
October, 2022
2
February, 2021
1
March, 2023
Available data
fastq
342
bam
322
bigWig
206
tsv
102
bed narrowPeak
93
zippedFastqFolder
47
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
Organism
239
Homo sapiens
Biosample type
1931
tissue
239
primary cell
199
cell line
84
in vitro differentiated cells
6
stem cell
Organ
109
epithelium
49
pancreas
27
connective tissue
24
kidney
24
vasculature
23
blood vessel
vein
13
musculature of body
11
liver
10
heart
7
brain
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
98
AMP
95
HPAP
45
T1D
1
ITG
Genome assembly (visualization)
133
hg19
117
GRCh38
Lab
98
AMP-T2D consortium
95
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
files.file_type!
fastq
month_released!
May, 2021
organ_slims!
vein
BIOSAMPLE
ASSAY
239 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
Langerhans cell
51
pancreatic alpha cell
25
1
pancreatic beta cell
16
1
epithelial cell of proximal tubule
1
10
1
hepatocyte
5
4
1
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