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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
149
total RNA-seq
100
single cell RNA-seq
2
small RNA-seq
Assay category
251
Transcription
242
DNA binding
DNA accessibility
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
136
May, 2021
58
September, 2018
53
August, 2017
48
July, 2018
45
May, 2020
43
April, 2018
31
June, 2019
26
October, 2019
18
July, 2019
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
February, 2021
2
October, 2018
Available data
504
bigWig
493
bam
331
fastq
251
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
9
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
493
Homo sapiens
Biosample type
1218
tissue
493
primary cell
484
cell line
251
in vitro differentiated cells
3
stem cell
Organ
202
epithelium
172
pancreas
26
connective tissue
25
vasculature
22
blood vessel
21
kidney
17
vein
12
brain
12
musculature of body
9
heart
9
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
313
AMP
180
T1D
Genome assembly (visualization)
465
hg19
458
GRCh38
Lab
313
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
xls
month_released!
February, 2021
BIOSAMPLE
ASSAY
493 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
84
53
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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