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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
Assay category
214
DNA binding
DNA accessibility
Target of assay
205
histone
205
histone modification
107
broad histone mark
98
narrow histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
114
May, 2021
32
September, 2018
28
August, 2017
21
June, 2019
6
November, 2017
6
October, 2019
4
May, 2019
3
August, 2021
Available data
491
bigWig
475
bam
349
fastq
258
tsv
214
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
45
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
Organism
214
Homo sapiens
Biosample type
595
tissue
392
cell line
214
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
66
epithelium
46
pancreas
14
vasculature
12
blood vessel
12
kidney
vein
9
connective tissue
8
musculature of body
6
brain
3
heart
3
liver
eye
Project
130
AMP
84
T1D
Genome assembly (visualization)
214
hg19
183
GRCh38
Lab
114
Kyle Gaulton, UCSD
100
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
eye
vein
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
14
pancreatic ductal cell
13
pancreatic endocrine cell
11
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