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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
Assay category
4
3D chromatin structure
Date released
3
October, 2022
1
March, 2020
Available data
359
bam
349
fastq
334
bigWig
206
tsv
112
bed narrowPeak
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
4
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
4
primary cell
2
cell line
Organ
4
epithelium
3
pancreas
1
blood vessel
1
vasculature
1
vein
Project
3
HPAP
1
AMP
Genome assembly (visualization)
4
hg19
Lab
3
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
3
audit script error
assay_slims!
DNA accessibility
month_released!
May, 2021
organ_slims!
esophagus
BIOSAMPLE
ASSAY
4 results
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Hi-C
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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