Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
4
Hi-C
2
small RNA-seq
Assay category
254
Transcription
238
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
227
histone
227
histone modification
118
broad histone mark
109
narrow histone mark
7
RNA binding protein
7
control
7
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
41
August, 2017
23
June, 2019
22
July, 2019
20
October, 2019
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
February, 2021
Available data
496
bigWig
486
bam
340
fastq
258
tsv
220
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
51
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
496
Homo sapiens
Biosample type
1472
tissue
496
primary cell
246
in vitro differentiated cells
237
cell line
3
stem cell
Organ
176
epithelium
160
pancreas
25
connective tissue
18
kidney
16
blood vessel
16
vasculature
12
vein
10
musculature of body
9
liver
7
heart
6
brain
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
316
AMP
180
T1D
Genome assembly (visualization)
496
hg19
453
GRCh38
Lab
281
AMP-T2D consortium
215
Kyle Gaulton, UCSD
Audit category:
31
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
November, 2017
November, 2019
BIOSAMPLE
ASSAY
496 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
small RNA-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
10
12
pancreatic beta cell
7
10
12
pancreatic ductal cell
13
4
10
+ See 67 more…
See all biosamples
Download