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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
75
ChIP-seq
6
WGBS
1
RRBS
Assay category
248
Transcription
75
DNA binding
DNA accessibility
7
DNA methylation
Target of assay
59
histone
59
histone modification
32
narrow histone mark
27
broad histone mark
16
control
Date released
76
February, 2023
59
September, 2018
48
July, 2018
41
August, 2017
38
April, 2018
38
September, 2020
18
February, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
505
bigWig
495
bam
349
fastq
258
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
330
Homo sapiens
Biosample type
330
primary cell
327
tissue
309
cell line
140
in vitro differentiated cells
4
stem cell
Organ
226
pancreas
202
epithelium
3
brain
3
connective tissue
2
vasculature
1
blood vessel
Project
198
AMP
132
HPAP
Genome assembly (visualization)
184
hg19
179
GRCh38
Lab
198
AMP-T2D consortium
132
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
bed broadPeak
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
330 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
WGBS
RRBS
primary cell
pancreatic alpha cell
12
52
13
6
pancreatic beta cell
12
21
13
exocrine cell
39
Langerhans cell
34
pancreatic ductal cell
9
4
13
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